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• 2020

  Cluster miRNAs and cancer: Diagnostic, prognostic and therapeutic opportunities

  Kabekkodu, S. P., Shukla, V., Varghese, V. K., Adiga, D., Vethil Jishnu, P., Chakrabarty, S. & Satyamoorthy, K., 01-01-2020, In: Wiley Interdisciplinary Reviews: RNA. e1563.

  Research output: Contribution to journal › Review article › peer-review

  • MicroRNAs
  • RNA
  • Neoplasms
  • Riboswitch
  • Genes
  11 Citations (Scopus)

• DINAX– a comprehensive database of inherited ataxias

  Chaudhari, S., Naha, R., Mukherjee, S., Sharma, A., Jayaram, P., Mallya, S., Chakrabarty, S. & Satyamoorthy, K., 11-2020, In: Computers in Biology and Medicine. 126, 104000.

  Research output: Contribution to journal › Article › peer-review

  • Ataxia
  • Databases
  • Genes
  • Phenotype
  • Spinocerebellar Degenerations

• Microbial Community Distribution and Core Microbiome in Successive Wound Grades of Individuals with Diabetic Foot Ulcers

  Jnana, A., Muthuraman, V., Varghese, V. K., Chakrabarty, S., Murali, T. S., Ramachandra, L., Shenoy, R. K., Rodrigues, G. S., Prasad, S. S., Dendukuri, D., Morschhauser, A., Nestler, J., Peter, H., Bier, F. F. & Satyamoorthy, K., 02-03-2020, In: Applied and Environmental Microbiology. 86, 6

  Research output: Contribution to journal › Article › peer-review

  • diabetic foot
  • Diabetic Foot
  • plant damage
  • Microbiota
  • microbiome
  1 Citation (Scopus)

• Multiple genetic mutations implicate spectrum of phenotypes in Bardet-Biedl syndrome

  Chakrabarty, S., Savantre, S. B., Ramachandra Bhat, C. & Satyamoorthy, K., 30-01-2020, In: Gene. 144164.

  Research output: Contribution to journal › Article › peer-review

  • Bardet-Biedl Syndrome
  • Phenotype
  • Mutation
  • Missense Mutation
  • Postaxial Polydactyly

• Placental mitochondrial DNA mutations and copy numbers in intrauterine growth restricted (IUGR) pregnancy

  Naha, R., Anees, A., Chakrabarty, S., Naik, P. S., Pandove, M., Pandey, D. & Satyamoorthy, K., 11-2020, In: Mitochondrion. 55, p. 85-94 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Mitochondrial DNA
  • Pregnancy
  • Mutation
  • Growth
  • Mitochondria

• Prognostic role of 14q32.31 miRNA cluster in various carcinomas: a systematic review and meta-analysis

  Jishnu, P. V., Jayaram, P., Shukla, V., Varghese, V. K., Pandey, D., Sharan, K., Chakrabarty, S., Satyamoorthy, K. & Kabekkodu, S. P., 01-02-2020, In: Clinical and Experimental Metastasis.

  Research output: Contribution to journal › Review article › peer-review

  • MicroRNAs
  • Meta-Analysis
  • Systematic Reviews
  • Carcinoma
  • Neoplasms
  1 Citation (Scopus)

• Relevance and actionable mutational spectrum in oral squamous cell carcinoma

  Jayaprakash, C., Varghese, V. K., Jayaram, P., Chakrabarty, S., Kudva, A., Ray, S. & Satyamoorthy, K., 01-05-2020, In: Journal of Oral Pathology and Medicine.

  Research output: Contribution to journal › Article › peer-review

  • Squamous Cell Carcinoma
  • Mutation
  • Ions
  • Precision Medicine
  • Neoplasm Genes
  1 Citation (Scopus)

• The emerging role of miRNA clusters in breast cancer progression

  Kandettu, A., Radhakrishnan, R., Chakrabarty, S., Sriharikrishnaa, S. & Kabekkodu, S. P., 12-2020, In: Biochimica et Biophysica Acta - Reviews on Cancer. 1874, 2, 188413.

  Research output: Contribution to journal › Review article › peer-review

  • MicroRNAs
  • Breast Neoplasms
  • Breast
  • Small Untranslated RNA
  • Gene Targeting

• The Role of Calcium Signaling in Regulation of Epithelial-Mesenchymal Transition

  Adiga, D., Radhakrishnan, R., Chakrabarty, S., Kumar, P. & Kabekkodu, S. P., 2020, (Accepted/In press) In: Cells Tissues Organs.

  Research output: Contribution to journal › Review article › peer-review

  • Calcium Signaling
  • Epithelial-Mesenchymal Transition
  • Neoplasm Metastasis
  • Neoplasms
  • Cell Movement
• 2019

  Corrigendum to “Mitochondria in health and disease” (Mitochondrion (2018) 43 (25–29), (S1567724918301442), (10.1016/j.mito.2018.06.006))

  Chakrabarty, S., Kabekkodu, S. P., Singh, R. P., Thangaraj, K., Singh, K. K. & Satyamoorthy, K., 01-07-2019, In: Mitochondrion. 47, 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  • India
  • Biological Science Disciplines
  • Mitochondria
  • Cell Biology
  • Molecular Biology

• Detection of mitochondrial dysfunction in vitro by laser-induced autofluorescence

  Raghushaker, C. R., Chandra, S., Chakrabarty, S., Kabekkodu, S. P., Satyamoorthy, K. & Mahato, K. K., 01-11-2019, In: Journal of Biophotonics. 12, 11, e201900056.

  Research output: Contribution to journal › Article › peer-review

  • Mitochondria
  • mitochondria
  • Lasers
  • Heavy metals
  • Heavy Metals
  2 Citations (Scopus)

• Enumeration of deregulated miRNAs in liquid and tissue biopsies of cervical cancer

  Shukla, V., Varghese, V. K., Kabekkodu, S. P., Mallya, S., Chakrabarty, S., Jayaram, P., Pandey, D., Banerjee, S., Sharan, K. & Satyamoorthy, K., 01-10-2019, In: Gynecologic Oncology.

  Research output: Contribution to journal › Article › peer-review

  • Liquid Biopsy
  • human MIRN454 microRNA
  • human MIRN409 microRNA
  • Uterine Cervical Neoplasms
  • MicroRNAs
  2 Citations (Scopus)

• Host and MTB genome encoded miRNA markers for diagnosis of tuberculosis

  Chakrabarty, S., Kumar, A., Raviprasad, K., Mallya, S., Satyamoorthy, K. & Chawla, K., 01-05-2019, In: Tuberculosis. 116, p. 37-43 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Mycobacterium tuberculosis
  • MicroRNAs
  • Circulating MicroRNA
  • Pulmonary Tuberculosis
  • Tuberculosis
  4 Citations (Scopus)

• Whole mitochondria genome mutational spectrum in occupationally exposed lead subjects

  Mani, M. S., Chakrabarty, S., Mallya, S. P., Kabekkodu, S. P., Jayaram, P., Varghese, V. K., Dsouza, H. S. & Satyamoorthy, K., 01-09-2019, In: Mitochondrion. 48, p. 60-66 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Mitochondria
  • Lead
  • Genome
  • DNA
  • Gene Order
  2 Citations (Scopus)
• 2018

  Clustered miRNAs and their role in biological functions and diseases

  Kabekkodu, S. P., Shukla, V., Varghese, V. K., D' Souza, J., Chakrabarty, S. & Satyamoorthy, K., 01-11-2018, In: Biological Reviews. 93, 4, p. 1955-1986 32 p.

  Research output: Contribution to journal › Article › peer-review

  • microRNA
  • MicroRNAs
  • Genes
  • Multigene Family
  • Cell death
  40 Citations (Scopus)

• Genotypic detection of fluoroquinolone resistance in drug-resistant Mycobacterium tuberculosis at a tertiary care centre in south Coastal Karnataka, India

  Chawla, K., Kumar, A., Shenoy, V. P., Chakrabarty, S. & Satyamoorthy, K., 01-06-2018, In: Journal of Global Antimicrobial Resistance. 13, p. 250-253 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Multidrug-Resistant Tuberculosis
  • Fluoroquinolones
  • Mycobacterium tuberculosis
  • Tertiary Care Centers
  • India
  3 Citations (Scopus)

• Mitochondria in health and disease

  Chakrabarty, S., Kabekkodu, S. P., Singh, R. P., Thangaraj, K., Singh, K. K. & Satyamoorthy, K., 01-01-2018, In: Mitochondrion.

  Research output: Contribution to journal › Article › peer-review

  • Mitochondria
  • Congresses
  • Health
  • Mitochondrial Diseases
  • Translational Medical Research
  23 Citations (Scopus)
• 2017

  Aberrant gene-specific DNA methylation signature analysis in cervical cancer

  Bhat, S., Kabekkodu, S. P., Varghese, V. K., Chakrabarty, S., Mallya, S. P., Rotti, H., Pandey, D., Kushtagi, P. & Satyamoorthy, K., 01-03-2017, In: Tumor Biology. 39, 3

  Research output: Contribution to journal › Article › peer-review

  • 5-hydroxymethylcytosine
  • DNA Methylation
  • 5-Methylcytosine
  • Uterine Cervical Neoplasms
  • Squamous Intraepithelial Lesions of the Cervix
  25 Citations (Scopus)

• Epigenomics, Pharmacoepigenomics, and Personalized Medicine in Cervical Cancer

  Kabekkodu, S. P., Chakrabarty, S., Ghosh, S., Brand, A. & Satyamoorthy, K., 01-09-2017, In: Public Health Genomics. 20, 2, p. 100-115 16 p.

  Research output: Contribution to journal › Review article › peer-review

  • Precision Medicine
  • Uterine Cervical Neoplasms
  • Epigenomics
  • Histone Code
  • Untranslated RNA
  8 Citations (Scopus)

• Targeted sequencing-based analyses of candidate gene variants in ulcerative colitis-associated colorectal neoplasia

  Chakrabarty, S., Varghese, V. K., Sahu, P., Jayaram, P., Shivakumar, B. M., Pai, C. G. & Satyamoorthy, K., 27-06-2017, In: British Journal of Cancer. 117, 1, p. 136-143 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Genetic Association Studies
  • Ulcerative Colitis
  • Mutation
  • Colorectal Neoplasms
  • Neoplasms
  11 Citations (Scopus)
• 2016

  Comparative analysis of copy number variations in ulcerative colitis associated and sporadic colorectal neoplasia

  Shivakumar, B. M., Chakrabarty, S., Rotti, H., Seenappa, V., Rao, L., Geetha, V., Tantry, B. V., Kini, H., Dharamsi, R., Pai, C. G. & Satyamoorthy, K., 14-04-2016, In: BMC Cancer. 16, 1, 271.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Ulcerative Colitis
  • Colorectal Neoplasms
  • Neoplasms
  • Real-Time Polymerase Chain Reaction
  • Immunohistochemistry
  13 Citations (Scopus)

• DNA methylation detection at single base resolution using targeted next generation bisulfite sequencing and cross validation using capillary sequencing

  Bhat, S., Mallya, S., Varghese, V. K., Jayaram, P., Chakrabarty, S., Joshi, K. S., Nesari, T. M. & Satyamoorthy, K., 15-12-2016, In: Gene. 594, 2, p. 259-267 9 p.

  Research output: Contribution to journal › Article › peer-review

  • hydrogen sulfite
  • DNA Methylation
  • Genes
  • betaglycan
  • Transforming Growth Factor-beta Type II Receptors
  4 Citations (Scopus)

• Perspectives on translational genomics and public health in India

  Chakrabarty, S., Kabekkodu, S. P., Brand, A. & Satyamoorthy, K., 01-04-2016, In: Public Health Genomics. 19, 2, p. 61-68 8 p.

  Research output: Contribution to journal › Review article › peer-review

  • Genomics
  • India
  • Public Health
  • Precision Medicine
  • Public Health Practice
  3 Citations (Scopus)

• Spastizin mutation in hereditary spastic paraplegia with thin corpus callosum

  Chakrabarty, S., Vijayakumar, N., Radhakrishnan, K. & Satyamoorthy, K., 01-10-2016, In: Journal of Neurology. 263, 10, p. 2130-2132 3 p.

  Research output: Contribution to journal › Letter › peer-review
  4 Citations (Scopus)
• 2015

  Copy number variations are progressively associated with the pathogenesis of colorectal cancer in ulcerative colitis

  Shivakumar, B. M., Rotti, H., Vasudevan, T. G., Balakrishnan, A., Chakrabarty, S., Bhat, G., Rao, L., Pai, C. G. & Satyamoorthy, K., 14-01-2015, In: World Journal of Gastroenterology. 21, 2, p. 616-622 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Ulcerative Colitis
  • Colorectal Neoplasms
  • Genes
  • Microsatellite Instability
  • National Cancer Institute (U.S.)
  14 Citations (Scopus)

• DNA methylation analysis of phenotype specific stratified Indian population

  Rotti, H., Mallya, S., Kabekkodu, P. S., Chakrabarty, S., Bhale, S., Bharadwaj, R., Bhat, B. K., Dedge, A. P., Dhumal, R. V., Gangadharan, G. G., Gopinath, P. M., Govindaraj, P., Joshi, K. S., Kondaiah, P., Nair, S., Nair, S. N. S., Nayak, J., Prasanna, B. V., Shintre, P., Sule, M. & 4 others, Thangaraj, K., Patwardhan, B., Valiathan, V. M. & Satyamoorthy, K., 08-05-2015, In: Journal of Translational Medicine. 13, 1, 151.

  Research output: Contribution to journal › Article › peer-review

  • DNA Methylation
  • CpG Islands
  • Methylation
  • hydrogen sulfite
  • Phenotype
  23 Citations (Scopus)

• Effectiveness and safety of fixed dose combination of acarbose/metformin in Indian Type 2 diabetes patients: Results from observational GLOBE Study

  behalf of GLOBE Investigators, 01-01-2015, In: Indian Journal of Endocrinology and Metabolism. 19, 1, p. 129-135 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Acarbose
  • Observational Studies
  • Type 2 Diabetes Mellitus
  • Safety
  • Observation
  5 Citations (Scopus)

• Genome Sequence of a Burkholderia pseudomallei clinical isolate from a patient with community-acquired pneumonia and septicemia

  Mukhopadhyay, C., Vandana, K. E., Chaitanya, T. A. K., Shaw, T., Bhat, H. V., Chakrabarty, S., Paul, B., Mallya, S., Murali, T. S. & Satyamoorthy, K., 01-07-2015, In: Genome Announcements. 3, 4, e0091515.

  Research output: Contribution to journal › Article › peer-review

  • Burkholderia pseudomallei
  • Pneumonia
  • Sepsis
  • Melioidosis
  • Genome
  2 Citations (Scopus)

• Mitochondrial biology: From molecules to diseases

  Kabekkodu, S. P., Chakrabarty, S., Shukla, V., Varghese, V. K., Singh, K. K., Thangaraj, K. & Satyamoorthy, K., 01-09-2015, In: Mitochondrion. 24, p. 93-98 6 p.

  Research output: Contribution to journal › Short survey › peer-review

  • Congresses
  • India
  • Mitochondria
  • Mitochondrial Genes
  • Biological Science Disciplines
  12 Citations (Scopus)
• 2014

  Upregulation of TFAM and mitochondria copy number in human lymphoblastoid cells

  Chakrabarty, S., D'Souza, R. R., Kabekkodu, S. P., Gopinath, P. M., Rossignol, R. & Satyamoorthy, K., 2014, In: Mitochondrion. 15, 1, p. 52-58 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Mitochondria
  • Up-Regulation
  • Mitochondrial DNA
  • Blood Cells
  • mitochondrial transcription factor A
  17 Citations (Scopus)
• 2012

  Comprehensive DNA copy number profile and BAC library construction of an Indian individual

  Chakrabarty, S., D'Souza, R. R., Bellampalli, R., Rotti, H., Saadi, A. V., Gopinath, P. M., Acharya, R. V., Govindaraj, P., Thangaraj, K. & Satyamoorthy, K., 01-06-2012, In: Gene. 500, 2, p. 186-193 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Bacterial Artificial Chromosomes
  • Clone Cells
  • DNA
  • olfactomedin
  • Ankyrin Repeat
  4 Citations (Scopus)
• 2011

  Methylation markers: A potential force driving cancer diagnostics forward

  Khandige, S., Shanbhogue, V. V., Chakrabarty, S. & Kapettu, S., 2011, In: Oncology Research. 19, 3-4, p. 105-110 6 p.

  Research output: Contribution to journal › Review article › peer-review

  • Methylation
  • Epigenomics
  • DNA Methylation
  • Neoplasms
  • Numismatics
  8 Citations (Scopus)