Classification of protein profiles using fuzzy clustering techniques

An application in early diagnosis of oral, cervical and ovarian cancer

Gopal Karemore, Jhinuk B. Mullick, R. Sujatha, Mads Nielsen, C. Santhosh

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Citations (Scopus)

Abstract

Present study has brought out a comparison of PCA and fuzzy clustering techniques in classifying protein profiles (chromatogram) of homogenates of different tissue origins: Ovarian, Cervix, Oral cancers, which were acquired using HPLC-LIF (High Performance Liquid Chromatography-Laser Induced Fluorescence) method developed in our laboratory. Study includes 11 chromatogram spectra each from oral, cervical, ovarian cancers as well as healthy volunteers. Generally multivariate analysis like PCA demands clear data that is devoid of day-to-day variation, artifacts due to experimental strategies, inherent uncertainty in pumping procedure which is very common activities during HPLC-LIF experiment. Under these circumstances we demonstrate how fuzzy clustering algorithm like Gath Geva followed by Sammon mapping outperform PCA mapping in classifying various cancers from healthy spectra with classification rate up to 95 % from 60%. Methods are validated using various clustering indexes and shows promising improvement in developing optical pathology like HPLC-LIF for early detection of various cancers in all uncertain conditions with high sensitivity and specificity.

Original languageEnglish
Title of host publication2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10
Pages6361-6364
Number of pages4
DOIs
Publication statusPublished - 01-12-2010
Event2010 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10 - Buenos Aires, Argentina
Duration: 31-08-201004-09-2010

Conference

Conference2010 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10
CountryArgentina
CityBuenos Aires
Period31-08-1004-09-10

Fingerprint

Fuzzy clustering
High performance liquid chromatography
Fluorescence
Proteins
Lasers
Pumping (laser)
Pathology
Clustering algorithms
Tissue
Experiments

All Science Journal Classification (ASJC) codes

  • Biomedical Engineering

Cite this

Karemore, G., Mullick, J. B., Sujatha, R., Nielsen, M., & Santhosh, C. (2010). Classification of protein profiles using fuzzy clustering techniques: An application in early diagnosis of oral, cervical and ovarian cancer. In 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10 (pp. 6361-6364). [5627292] https://doi.org/10.1109/IEMBS.2010.5627292
Karemore, Gopal ; Mullick, Jhinuk B. ; Sujatha, R. ; Nielsen, Mads ; Santhosh, C. / Classification of protein profiles using fuzzy clustering techniques : An application in early diagnosis of oral, cervical and ovarian cancer. 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10. 2010. pp. 6361-6364
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Karemore, G, Mullick, JB, Sujatha, R, Nielsen, M & Santhosh, C 2010, Classification of protein profiles using fuzzy clustering techniques: An application in early diagnosis of oral, cervical and ovarian cancer. in 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10., 5627292, pp. 6361-6364, 2010 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10, Buenos Aires, Argentina, 31-08-10. https://doi.org/10.1109/IEMBS.2010.5627292

Classification of protein profiles using fuzzy clustering techniques : An application in early diagnosis of oral, cervical and ovarian cancer. / Karemore, Gopal; Mullick, Jhinuk B.; Sujatha, R.; Nielsen, Mads; Santhosh, C.

2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10. 2010. p. 6361-6364 5627292.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

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Karemore G, Mullick JB, Sujatha R, Nielsen M, Santhosh C. Classification of protein profiles using fuzzy clustering techniques: An application in early diagnosis of oral, cervical and ovarian cancer. In 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10. 2010. p. 6361-6364. 5627292 https://doi.org/10.1109/IEMBS.2010.5627292