Metabolomics applicable to retinal vascular diseases

Satish Patnaik, Subhadra Jalali, Manjunath B. Joshi, Kapaettu Satyamoorthy, Inderjeet Kaur

Research output: Chapter in Book/Report/Conference proceedingChapter

Abstract

Metabolomics refers to the systematic identification and quantification of the small molecule metabolites (the metabolome) of a biological system in a given space (cell, tissue, organ, biological fluid, or organism) and time. Global metabolic profiling provides broad range of coverage for most of the analytes present in any tissue. Human retina is metabolically highly active, and retinal vascular diseases such as age-related macular degeneration (AMD), diabetic retinopathy (DR), retinal vein occlusion (RVO), central retinal artery occlusion, and retinopathy of prematurity (ROP) are often associated with the disruptions in metabolic activities. A systematic study of total retinal metabolites from human diseased retina is a major challenge owing to the nonavailability of tissue specimens. Therefore, vitreous humor being very proximal to retina could be used as surrogate for retinal metabolomic analysis. As the extraction method adopted for such analysis determines the type of metabolites, two different types of solvent (methanol and chloroform)-based extraction methods could be used for retinal vascular patient samples (vitreous humor). Metabolites obtained from both the extraction methods are then subjected to LC-MS/MS for detection and identification.

Original languageEnglish
Title of host publicationMethods in Molecular Biology
PublisherHumana Press Inc.
Pages325-331
Number of pages7
DOIs
Publication statusPublished - 01-01-2019

Publication series

NameMethods in Molecular Biology
Volume1996
ISSN (Print)1064-3745

Fingerprint

Retinal Diseases
Retinal Vessels
Metabolomics
Vascular Diseases
Retina
Vitreous Body
Retinal Artery Occlusion
Retinal Vein Occlusion
Retinopathy of Prematurity
Metabolome
Macular Degeneration
Diabetic Retinopathy
Chloroform
Methanol

All Science Journal Classification (ASJC) codes

  • Molecular Biology
  • Genetics

Cite this

Patnaik, S., Jalali, S., Joshi, M. B., Satyamoorthy, K., & Kaur, I. (2019). Metabolomics applicable to retinal vascular diseases. In Methods in Molecular Biology (pp. 325-331). (Methods in Molecular Biology; Vol. 1996). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-9488-5_24
Patnaik, Satish ; Jalali, Subhadra ; Joshi, Manjunath B. ; Satyamoorthy, Kapaettu ; Kaur, Inderjeet. / Metabolomics applicable to retinal vascular diseases. Methods in Molecular Biology. Humana Press Inc., 2019. pp. 325-331 (Methods in Molecular Biology).
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Patnaik, S, Jalali, S, Joshi, MB, Satyamoorthy, K & Kaur, I 2019, Metabolomics applicable to retinal vascular diseases. in Methods in Molecular Biology. Methods in Molecular Biology, vol. 1996, Humana Press Inc., pp. 325-331. https://doi.org/10.1007/978-1-4939-9488-5_24

Metabolomics applicable to retinal vascular diseases. / Patnaik, Satish; Jalali, Subhadra; Joshi, Manjunath B.; Satyamoorthy, Kapaettu; Kaur, Inderjeet.

Methods in Molecular Biology. Humana Press Inc., 2019. p. 325-331 (Methods in Molecular Biology; Vol. 1996).

Research output: Chapter in Book/Report/Conference proceedingChapter

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Patnaik S, Jalali S, Joshi MB, Satyamoorthy K, Kaur I. Metabolomics applicable to retinal vascular diseases. In Methods in Molecular Biology. Humana Press Inc. 2019. p. 325-331. (Methods in Molecular Biology). https://doi.org/10.1007/978-1-4939-9488-5_24